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microPublication / Biology / The mapping of Drosophila melanogaster...
This article has a correction:
  • Corrigendum - April 08, 2019
The mapping of Drosophila melanogaster mutant A.4.4
Kayla L Bieser1, Joyce Stamm2, Ayala A Aldo1, Suneil Bhaskara2, Makayla Clairborne2, Joselyn N Coronel Gómez2, Ron Dean1, Aaron Dowell2, Evan Dowell2, Mathew Eissa1, Ahmad A Fawaz3, Michael M Fouad-Meshriky3, Dustin Godoy1, Krista Gonzalez1, Malak K Hachem3, Malak F Hammoud3, Anthony Huffman3, Hunter Ingram2, Alex B Jackman3, Bibek Karki2, Natalia Khalil3, Houda Khalil3, Tran Khanh Ha1, Arjun Kharel2, Izabell Kobylarz1, Hunter Lomprey1, Adam Lonnberg1, Safa Mahbuba3, Hend Massarani3, Madeline Minster1, Krystina Molina1, Lynette Molitor1, Taylor Murray1, Payal M Patel3, Sydney Pechulis1, Architha Raja1, Gladys Rastegari1, Skylar Reeves2, Niveda Sabu1, Rafael Salazar1, Devan Schulert3, Matthew D Senopole3, Kristen Sportiello3, Claudia Torres1, Jade Villalobos1, Joseph Wu3, Stacy Zeigler1 and Jacob D Kagey3
1Department of Physical and Life Sciences, Nevada State College
2Department of Biology, University of Evansville
3Biology Department, University of Detroit Mercy
Correspondence to: Jacob D Kagey (kageyja@udmercy.edu)
These authors contributed equally.
A. Mosaic eye of control (;FRT42D,ark82) and mutant A.4.4 (;FRT42D,ark82,A.4.4) flies, mutant tissue is pigmented (mw+). Two representative mosaic eyes are shown for A.4.4. Arrow denotes consistent patch of wild type tissue observed on dorsal tip of mosaic eye. B. Genomic region on Chromosome 2R in which mutant A.4.4 fails to complement, 2R:22,592,996..22,661,827. Image adapted from Flybase.org (Gramates et al. 2017).

Description

A novel Drosophila melanogaster mutant A.4.4 was isolated from a conditional Flp/FRT mosaic eye screen in the context of blocked apoptosis (Kagey et al., 2012). The ;FRT42D, Dark82 chromosome was used as a starting point for the EMS mutagenesis screen to screen to screen for mutations that conferred a growth advantage in the environment of blocked apoptosis via the homozygous Dark82 allele (Akdemir et al., 2006). Mutants were screened for over-representation of mutant tissue (pigmented) as compared to the Dark82 mosaic control (Figure 1A).  The mutant mosaic phenotype generated by the cross FRT42D Dark82 A.4.4 X Ey>Flp; FRT42D resulted in mosaic eyes with a slight increase in the red:white ratio (approximately 70:30) as compared to FRT42D Dark82 control eyes (approximately 60:40). Ratios were estimated from observation of multiple mosaic eyes for each genotype. In addition to the increase in mutant tissue, the mosaic A.4.4 eye was observed with a consistent clone/patch of wild type (unpigmented) tissue at the dorsal peak of the eye (Figure 1A, arrow denotes observed region lacking mutant tissue). Whether this mutant phenotype is dependent upon this block in apoptosis is unknown at this time, however other mutant phenotypes in this screen have demonstrated a dependence upon a block in cell death (Kagey et al., 2012).

The genomic location of the homozygous lethal A.4.4 was mapped by deficiency mapping and complementation tests to identify the region on 2R that failed to complement. The location of the mutation was mapped by three independent groups of researchers that are part of the Fly-CURE consortium utilizing complementation mapping and the Bloomington Stock Center 2R Deficiency Kit (Cook et. al., 2012). We find that mutant A.4.4 failed to complement the deficiency Df(2R)X58-12/SM5. Mutant A.4.4 complemented the overlapping deficiencies Df(2R)BSC597/SM6a and Df(2R)BSC787/SM6a.  Together these data create a failure to complement region of 2R:22,592,996..22,661,827 (Figure 1B). Additional complementation tests were set up with individual alleles of candidate genes found within this region and available at the BDSC and tested for lethality (Table 1). All of these crosses to individual alleles complemented A.4.4 suggesting that the mutation resides in one of the other genes within this genomic region. The initial complementation experiments were conducted in triplicate at three independent institutions, while the individual allele complementation tests were conducted once.

 

Stock number

BDSC

Gene affected Genotype Mating with A.4.4
12060 Vps20 P{PZ}Vps20rG270, l(2)rG270rG270/CyO Complement
16199 CG4294 y1 w1118; PBac{5HPw+}CG4294B316/CyO Complement
17065 CG3927 w[1118]; P{w[+mC]=EP}EP2515/CyO Complement
17739 Ugt58Fa w1118; PBac{PB}Ugt58Fac05973/CyO Complement
23049 CG33143 y1 w67c23; Mi{ET1}CG33143MB01293/CyO Complement
29511 RpS24 w*; P{FRT(whs)}G13 P{lacW}RpS24SH2053/CyO Complement
63874 RpS16 w1118; PBac{IT.GAL4}RpS160887-G4/CyO Complement
67706 Vps20 w*; Vps20I3/CyO Complement

Reagents

;FRT42D, ark82/CyO (Akdemir et al. 2006)
;FRT42D, ark82, A.4.4/CyO
Ey>Flp;FRT42D (BDSC 5616)
Bloomington Drosophila Stock Center 2R Deficiency Kit (Cook et al. 2012)
Individual alleles used for complementation tests (see Table 1 for BDSC numbers)

References

Gramates LS, Marygold SJ, Santos GD, Urbano JM, Antonazzo G, Matthews BB, Rey AJ, Tabone CJ, Crosby MA, Emmert DB, Falls K, Goodman JL, Hu Y, Ponting L, Schroeder AJ, Strelets VB, Thurmond J. Zhou P, the FlyBase Consortium. FlyBase at 25: looking to the future. Nucleic Acids Res. 2017. Jan 4;45(D1)D663-D671
10.1093/nar/gkw1016 | PubMed
Kagey JD, Brown JA, Moberg KH. Regulation of Yorkie activity in Drosophila imaginal discs by the Hedgehog receptor gene patched. Mech Dev. 2012. Sep-Dec 29(9-12):339-49
10.1016/j.mod.2012.05.007 | PubMed
Cook RK, Christensen SJ, Deal JA, Coburn RA, Deal ME, Gresens JM, Kaufman TC, Cook KR. The generation of chromosomal deletions to provide extensive coverage and subdivision of the Drosophila melanogaster genome. Genome Biol. 2012; 13(3):R21
10.1186/gb-2012-13-3-r21 | PubMed
Akdemir F, Farkas R, Chen P, Juhasz G. Medved’ová L. Sass M, Want L, Wang X. Chittaranjan S. Gorski SM, Rodrigues A, Abrams JM. Autophay occurs upstream of parallel to the apoptosome during histolytic cell death. Development. 2006. Apr;133(8):1457-65.
10.1242/dev.02332 | PubMed

Funding

none

Reviewed By

Andrew Zelhof

History

Received: September 10, 2018
Accepted: December 15, 2018
Published: December 17, 2018

Copyright

© 2018 by the authors. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International (CC BY 4.0) License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Citation

Bieser, KL; Stamm, J; Aldo, AA; Bhaskara, S; Clairborne, M; Coronel Gómez, JN; Dean, R; Dowell, A; Dowell, E; Eissa, M; Fawaz, AA; Fouad-Meshriky, MM; Godoy, D; Gonzalez, K; Hachem, MK; Hammoud, MF; Huffman, A; Ingram, H; Jackman, AB; Karki, B; Khalil, N; Khalil, H; Ha, TK; Kharel, A; Kobylarz, I; Lomprey, H; Lonnberg, A; Mahbuba, S; Massarani, H; Minster, M; Molina, K; Molitor, L; Murray, T; Patel, PM; Pechulis, S; Raja, A; Rastegari, G; Reeves, S; Sabu, N; Salazar, R; Schulert, D; Senopole, MD; Sportiello, K; Torres, C; Villalobos, J; Wu, J; Zeigler, S; Kagey, JD (2018). The mapping of Drosophila melanogaster mutant A.4.4. microPublication Biology. 10.17912/micropub.biology.000069. Corrigendum in: microPublication Biology. 10.17912/micropub.biology.000106.
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