microPublication

Get Your Data Out, Be Cited

  • About
    • Editorial Policies
      • Editorial Staff
      • Editorial Board
      • Criteria For Publication
      • Publishing Information
      • Data Sharing Policy
    • For Authors
      • Preparation And Submission Of A Manuscript
      • Peer Review Process
      • Following Acceptance
      • Appeals
    • For Reviewers
    • Why micropublish?
  • Submit a microPublication
  • Journals
    • microPublication Biology
      • Editorial Board
  • microPublications
    • Biology
      • Species
        • Arabidopsis
        • C. elegans
        • D. discoideum
        • Drosophila
        • Human
        • Mouse
        • S. cerevisiae
        • S. pombe
        • Xenopus
        • Zebrafish
      • Categories
        • Phenotype Data
        • Methods
        • Expression Data
        • Genotype Data
        • Integrations
        • Genetic Screens
        • Models of Human Disease
        • Software
        • Interaction data
        • Database Updates
        • Electrophysiology Data
        • Phylogenetic Data
        • Science and Society
        • Biochemistry
  • Contact
  • More
    • Archives
    • FAQs
    • Newsletter
microPublication / Biology / New alleles of the lin-22/Hairy...
New alleles of the lin-22/Hairy bHLH transcription factor
Maria Doitsidou1, 2 and Oliver Hobert2
1Centre for Discovery Brain Sciences, University of Edinburgh, Edinburgh, UK
2Department of Biochemistry and Molecular Biophysics, Department of Biological Sciences, Howard Hughes Medical Institute, Columbia University, New York, USA
Correspondence to: Oliver Hobert (or38@columbia.edu)
Figure 1 : Alleles of lin-22. (A) lin-22 mutant alleles display an ectopic expression of dat-1::gfp (vtIs1; Nass et al., 2002). One representative example is shown. (B) Quantification of lin-22 mutant defects and sequence changes. (C) Sequence change in protein coding sequences. Sequences of Hairy homologs from different animal phyla are shown.

Description

We screened for mutants that affect expression of dopaminergic neuron identity, using a transcriptional reporter for expression of the dopamine transporter dat-1. We previously published and characterized a number of mutants that affect dat-1 expression in different neuron types (Doitsidou et al., 2008). Four alleles that we did not publish in our original screening paper are described here. While wild-type animals only display a single dat-1::gfp(+) neuron pair in the midbody region, the PDE neuron pair from the postdeirid lineage, all 4 mutant alleles display ectopic dat-1::gfp expression along the anterior/posterior axis of the animal (Fig.1A,B). Postdeirid lineage duplication defects were previously described in animals lacking the bHLH transcription factor lin-22/Hairy (Wrischnik and Kenyon, 1997). We find that the canonical lin-22 allele, n372, indeed displays dat-1::gfp expression defects similar to those observed in our mutants (Fig.1B). We sequenced the lin-22 locus in all of our four, independently isolated alleles. Two of them are premature stop codons, one is a missense mutation affecting a conserved leucine residue and all display a similar penetrance of defects (Fig.1B,C). The fourth and weakest allele, ot269, displayed no sequence alteration in the lin-22 coding sequence or in exon/intron boundaries. ot269 failed to complement ot267, ot268, ot287 and the canonical lin-22 allele n372. Furthermore, the ot269 phenotype was rescued by injection of the fosmid WRM0627dG07, which contains lin-22 and one additional complete gene. We found that ot269 harbors a single nucleotide change in the upstream intergenic region of lin-22, almost 5kb away from the start of the gene (sequence change shown in Fig.1B). Subsequent work has shown that this mutation affects a binding site for a GATA transcription factor (Katsanos et al. 2017).

Reagents

OH4265   lin-22(ot267);vtIs1

OH4270   lin-22(ot268);vtIs1

OH4271   lin-22(ot269);vtIs1

OH4320   lin-22(ot287);vtIs1

Strains are available at the CGC.

 

Acknowledgments

We thank Chi Chen for injections, Andrea J. Pretorian and Albert Lee for help with screening, Alexander Boyanov and Berta Vidal for help with sequencing.

References

Doitsidou, M, Flames, N, Lee, AC, Boyanov A and Hobert, O (2008) "Automated screening for mutants affecting dopaminergic neuron specification in C. elegans", Nature Methods 5 (10), 869-872.
PubMed
Katsanos D, Koneru SL, Mestek Boukhibar L, Gritti N, Ghose R, Appleford PJ, Doitsidou M, Woollard A, van Zon JS, Poole RJ, Barkoulas M. “Stochastic loss and gain of symmetric divisions in the C. elegans epidermis perturbs robustness of stem cell number” PLoS Biol 15(11): e2002429.
PubMed
Nass, R., Hall, D.H., Miller, D.M., III & Blakely, R.D. (2002) “Neurotoxin-induced degeneration of dopamine neurons in Caenorhabditis elegans” Proc. Natl. Acad. Sci. USA 99, 3264–3269.
PubMed
Wrischnik, L and Kenyon, C (1997) “The role of lin-22, a hairy/Enhancer of split homolog, in patterning the peripheral nervous system of C. elegans” Development 124, 2875-2888.
PubMed

Funding

This work was funded was funded by the US National Institutes of Health (R01NS050266), the Howard Hughes Medical Institute and a European Molecular Biology Organization long-term fellowship to M.D.

Author Contributions

Maria Doitsidou: Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Validation, Visualization, Writing - review and editing, Funding acquisition
Oliver Hobert: Project administration, Writing - original draft, Writing - review and editing, Funding acquisition, Supervision.

Reviewed By

Jintao Luo

History

Received: April 4, 2019
Accepted: April 19, 2019
Published: April 19, 2019

Copyright

© 2019 by the authors. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International (CC BY 4.0) License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Citation

Doitsidou, M; Hobert, O (2019). New alleles of the lin-22/Hairy bHLH transcription factor. microPublication Biology. 10.17912/micropub.biology.000111.
Download: RIS BibTeX
microPublication Biology is published by
1200 E. California Blvd. MC 1-43 Pasadena, CA 91125
The microPublication project is supported by
The National Institute of Health -- Grant #: 1U01LM012672-01
microPublication Biology:ISSN: 2578-9430