microPublication

Get Your Data Out, Be Cited

  • About
    • Editorial Policies
      • Editorial Staff
      • Editorial Board
      • Criteria For Publication
      • Publishing Information
      • Data Sharing Policy
    • For Authors
      • Preparation And Submission Of A Manuscript
      • Peer Review Process
      • Following Acceptance
      • Appeals
    • For Reviewers
    • Why micropublish?
  • Submit a microPublication
  • Journals
    • microPublication Biology
      • Editorial Board
  • microPublications
    • Biology
      • Species
        • Arabidopsis
        • C. elegans
        • D. discoideum
        • Drosophila
        • Human
        • Mouse
        • S. cerevisiae
        • S. pombe
        • Xenopus
        • Zebrafish
      • Categories
        • Phenotype Data
        • Methods
        • Expression Data
        • Genotype Data
        • Integrations
        • Genetic Screens
        • Models of Human Disease
        • Software
        • Interaction data
        • Database Updates
        • Electrophysiology Data
        • Phylogenetic Data
        • Science and Society
        • Biochemistry
  • Contact
  • More
    • Archives
    • FAQs
    • Newsletter
microPublication / Biology / Genetic mapping of shnE.3.2 in...
Genetic mapping of shnE.3.2 in Drosophila melanogaster
Kayla Bieser1, Jamie Siders Sanford2, Ken Saville3, Katherine F Arreola1, Zachary T Ayres2, David Basulto1, Serena Benito1, Christopher J Breen3, Julian A Brix1, Nicole Brown1, Krissa K Burton2, Taree M Chadwick1, Matthew Chen3, Katherine Chu1, Beverly L Corbett1, Zerrick Dill3, Meghan A Faughender1, Ashlynn D Hickey2, Joshua S Julia2, Shannon S Kelty2, Briggette BK Jobs3, Bryce A Krason1, Brian Lam1, Colin L McCullough2, Bryanna R McEwen2, Julian L McKenzie2, Kayla R McQuinn3, Chloe M Moritz2, Kristina E Myers2, Elizabeth M Naugle2, Ashley M Nutter2, Danielle Q O'Conke2, Megan T O'Grondik2, Kriya B Patel2, Sydney M Rudowski3, Emma N Sberna2, Gunner M Stall3, Tad L Steiner2, Eda Tanriverdi2, Natalie Torres Patarroyo1, Virginia L Traster1, Leo P Tsai1, Andrew J Valenti2, Mariela M Villegas1, Samantha M Voors2, Kierra K Watson2, Megan E Wright2 and Jacob D Kagey4
1Department of Physical and Life Sciences, Nevada State College
2Department of Biological and Allied Health Sciences, Ohio Northern University
3Department of Biology, Albion College
4Biology Department, University of Detroit Mercy
Correspondence to: Jacob D Kagey (kageyja@udmercy.edu)
A. Mosaic control (FRT42D Dark82) and mosaic mutant E.3.2 (FRT42D Dark82shnE.3.2) eyes. In both genotypes, homozygous mutant eye tissue is pigmented (w+mC). The top panels are representative images of the lateral view and bottom panels the medial view. B. Genomic region of chromosome 2R in which mutant E.3.2 failed to complement with deficiency mapping (2R:11,186,047..11,665,391). The shn gene falls within this region. B. Image adapted from flybase.org (Gramates et al., 2017).

Description

An EMS screen was conducted utilizing the Flp/FRT system to identify mutations that lead to phenotypic alterations in the size of the eye, the ratio of mutant to wild type tissue (red over white), or the developmental patterning of the mosaic eye. This screen was completed in the genetic background of blocked apoptosis in the homozygous mutant cells to identify conditional regulators of cell growth and eye development (Kagey et al., 2012). The block in apoptosis in the mosaic mutant tissue was achieved by using the FRT42D Dark82chromosome, which retains the w+mC(pigmentation), as a starting point for the EMS mutagenesis (Akdemir et al., 2006). One of the mutants identified was mutant E.3.2. The mutant mosaic phenotype, generated from the cross FRT42D Dark82 E.3.2 XEy>Flp; FRT42D, resulted in a range of phenotypes. This included, gross eye pattern disruption, abnormal shape, and antennal overgrowth (see bottom image) when compared to the FRT42D Dark82 mosaic controls (Figure 1A). The control mosaic phenotype had a characteristic 60:40 red:white ratio as compared to the mutant mosaic phenotype of approximately 30:70 red:white ratio. This indicates a reduction in mutant tissue, but included abnormal cranial, eye, and antennal development (Figure 1A).

The genetic mapping of the location of E.3.2 on 2R was completed by three independent groups of undergraduate researchers at Nevada State College, Albion College, and Ohio Northern University as part of the Fly-CURE consortium (Bieser et al., 2018, Stamm et al., 2019). Virgin females from the FRT42D E.3.2 Dark82/CyO stock were mated in series to male flies from the 87 deficiency stocks that comprise the Bloomington Stock Center 2R Deficiency Kit (only stocks distal to the FRT42D site were used for mapping) (Cook et al., 2012). Mutant E.3.2 failed to complement deficiencies Df(2R)BSC595 (2R:10,385,967..11,288,578), Df(2R)ED2155 (2R:10,894,096..11,397,442), and Df(2R)ED2219 (2R:11,197,412..11,665,391), while complementing the flanking deficiency Df(2R)Exel6059 (2R:10,874,385..11,186,047). This resulted in the genomic region of 2R:11,186,047..11,665,391 failing to complement (Figure 1B). A lethal allele for the candidate gene Schnurri, shn[1],was crossed independently to E.3.2 to test for complementation. E.3.2 failed to complement a previously defined strong hypomorphic allele, shn[1] (Horsfield et al., 1998), indicating that E.3.2 is a novel shn allele, shnE.3.2. Shn is a zinc-finger transcription factor known to act in complex with Mothers Against Dpp (mad) in response to the BMP-related Decapentaplegic (Dpp) signaling pathway (Dai et al., 2000; Udagawa et al., 2000). Dpp, a member of the TGFβ superfamily, is a Drosophila morphogen critical for directing early embryonic patterning and regulating cell growth. Dpp mutants have shown that Dpp signaling is necessary for proper patterning in the eye-antenna disc in the L2 and L3 wandering larval stages of Drosophila development (Won et al., 2015). The current work is in agreement with previous findings and indicate that perturbations of shn, a downstream target of Dpp, is involved in regulation of cell growth and developmental patterning in vivo.

Reagents

FRT42D  Dark82/CyO (Akdemir et al., 2006)

FRT42D  Dark82  shnE.3.2/CyO (this manuscript)

Ey>Flp; FRT42D (BDSC 5616)

Bloomington Drosophila Stock Center 2R Deficiency Kit (Cook et al., 2012)

w1118;Df(2R)BSC595/CyO (BDSC 25428)

w1118;Df(2R)ED2219,P{w[+mW.Scer\FRT.hs3]=3’.RS5+3.3’}ED2219/Sm6a (BDSC 8910)

w1118;Df(2R)ED2155,P{w[+mW.Scer\FRT.hs3]=3’.RS5+3.3’}ED2155/SM6a (BDSC 9344)

w1118;Df(2R)Exel6059,P{w[+mC]=XP-U}Exel6059/CyO (BDSC 7541)

cn[1] shn[1] bw[1] sp[1]/CyO (BDSC 3008)

Acknowledgments

Stocks obtained from the Bloomington Drosophila Stock Center (NIH P40OD018537) were used in this study.

References

Akdemir F, Farkas R, Chen P, Juhasz G. Medved’ová L. Sass M, Want L, Wang X. Chittaranjan S. Gorski SM, Rodrigues A, Abrams JM. Autophagy occurs upstream of parallel to the apoptosome during histolytic cell death. Development. 2006. Apr;133(8):1457-65.
PubMed
Bieser, K. L., Stamm, J., Aldo, A. A., Bhaskara, S., Claiborne, M., Coronel Gómez, J. N., … Kagey, J. D. (2018) The Mapping of Drosophila melanogaster mutant A.4.4. microPublication Biology.
10.17912/micropub.biology.000069 | PubMed
Cook RK, Christensen SJ, Deal JA, Coburn RA, Deal ME, Gresens JM, Kaufman TC, Cook KR. The generation of chromosomal deletions to provide extensive coverage and subdivision of the Drosophila melanogaster genome. Genome Biol. 2012. 13(3):R21
PubMed
Dai H, Hogan C, Gopalakrishnan B, Torres-Vazquez J, Nguyen M, Park S, Raftery LA, Warrior R, Arora K. The zing finger protein a Smad partner in mediating the transcriptional response to decapentaplegic. Dev Biol. 2000. 15;227(2):373-387.
PubMed
Gramates LS, Marygold SJ, Santos GD, Urbano JM, Antonazzo G, Matthews BB, Rey AJ, Tabone CJ, Crosby MA, Emmert DB, Falls K, Goodman JL, Hu Y, Ponting L, Schroeder AJ, Strelets VB, Thurmond J. Zhou P, the FlyBase Consortium. FlyBase at 25: looking to the future. Nucleic Acids Res. 2017. Jan 4;45(D1)D663-D671
PubMed
Horsfield, J, Penton A, Secombe J, Hoffman FM, Richardson H. Decapentaplegic is required for arrest in G1 phase during Drosophila eye development. Development. 1998. 125:5069-5078.
PubMed
Kagey JD, Brown JA, Moberg KH. Regulation of Yorkie activity in Drosophila imaginal discs by the Hedgehog receptor gene patched. Mech Dev. 2012. Sep-Dec 29(9-12):339-349
PubMed
Stamm, J; Joshi, GS; Anderson, M; Bussing, K; Houchin, C; Elinsky, AC; Flyte, JT; Husseini, N; Jarosz, D; Johnson, CL; Johnson, AF; Jones, CE; Kooner, TP; Myhre, D; Rafaill, TN; Sayed, S; Swan, KW; Toma, J; Kagey, JD (2019). Genetic mapping of EgfrL.3.1in Drosophila melanogaster. microPublication Biology.
10.17912/micropub.biology.000098
Udagawa Y, Hanai J, Tada K, Grieder NC, Momoeda M, Taketani Y, Affolter M, Kawabata M, MiyazonoK. Schnurri interacts with Mad in a Dpp-dependent manner. Genes Cells. 2000. May; 5(5):359-369.
PubMed
Won JH, Tsogtbaatar O, Son W, Singh A, Choi KW, Cho KO. Cell type-specific responses to wingless, hedgehog and decapentaplegic are essential for patterning early eye antenna disc in Drosophila. PLoS One. 2015. Apr 7;10(4):e0121999.
10.1371/journal.pone.0121999 | PubMed

Funding

None

Author Contributions

Kayla Bieser: Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing - original draft, Writing - review and editing
Jamie Siders Sanford: Data curation, Formal analysis, Investigation, Methodology, Project administration, Supervision, Validation, Writing - original draft, Writing - review and editing
Ken Saville: Data curation, Formal analysis, Investigation, Methodology, Project administration, Supervision, Validation, Writing - review and editing
Katherine F Arreola: Formal analysis, Investigation, Validation, Writing - review and editing
Zachary T Ayres: Formal analysis, Investigation, Validation, Writing - review and editing
David Basulto: Formal analysis, Investigation, Validation, Writing - review and editing
Serena Benito: Formal analysis, Investigation, Validation, Writing - review and editing
Christopher J Breen: Formal analysis, Investigation, Validation, Writing - review and editing
Julian A Brix: Formal analysis, Investigation, Validation, Writing - review and editing
Nicole Brown: Formal analysis, Investigation, Validation, Writing - review and editing
Krissa K Burton: Formal analysis, Investigation, Validation, Writing - review and editing
Taree M Chadwick: Formal analysis, Investigation, Validation, Writing - review and editing
Matthew Chen: Formal analysis, Investigation, Validation, Writing - review and editing
Katherine Chu: Formal analysis, Investigation, Validation, Writing - review and editing
Beverly L Corbett: Formal analysis, Investigation, Validation, Writing - review and editing
Zerrick Dill: Formal analysis, Investigation, Validation, Writing - review and editing
Meghan A Faughender: Formal analysis, Investigation, Validation, Writing - review and editing
Ashlynn D Hickey: Formal analysis, Investigation, Validation, Writing - review and editing
Joshua S Julia: Formal analysis, Investigation, Validation, Writing - review and editing
Shannon S Kelty: Formal analysis, Investigation, Validation, Writing - review and editing
Briggette BK Jobs: Formal analysis, Investigation, Validation, Writing - review and editing
Bryce A Krason: Formal analysis, Investigation, Validation, Writing - review and editing
Brian Lam: Formal analysis, Investigation, Validation, Writing - review and editing
Colin L McCullough: Formal analysis, Investigation, Validation, Writing - review and editing
Bryanna R McEwen: Formal analysis, Investigation, Validation, Writing - review and editing
Julian L McKenzie: Formal analysis, Investigation, Validation, Writing - review and editing
Kayla R McQuinn: Formal analysis, Investigation, Validation, Writing - review and editing
Chloe M Moritz: Formal analysis, Investigation, Validation, Writing - review and editing
Kristina E Myers: Formal analysis, Investigation, Validation, Writing - review and editing
Elizabeth M Naugle: Formal analysis, Investigation, Validation, Writing - review and editing
Ashley M Nutter: Formal analysis, Investigation, Validation, Writing - review and editing
Danielle Q O'Conke: Formal analysis, Investigation, Validation, Writing - review and editing
Megan T O'Grondik: Formal analysis, Investigation, Validation, Writing - review and editing
Kriya B Patel: Formal analysis, Investigation, Validation, Writing - review and editing
Sydney M Rudowski: Formal analysis, Investigation, Validation, Writing - review and editing
Emma N Sberna: Formal analysis, Investigation, Validation, Writing - review and editing
Gunner M Stall: Formal analysis, Investigation, Validation, Writing - review and editing
Tad L Steiner: Formal analysis, Investigation, Validation, Writing - review and editing
Eda Tanriverdi: Formal analysis, Investigation, Validation, Writing - review and editing
Natalie Torres Patarroyo: Formal analysis, Investigation, Validation, Writing - review and editing
Virginia L Traster: Formal analysis, Investigation, Validation, Writing - review and editing
Leo P Tsai: Formal analysis, Investigation, Validation, Writing - review and editing
Andrew J Valenti: Formal analysis, Investigation, Validation, Writing - review and editing
Mariela M Villegas: Formal analysis, Investigation, Validation, Writing - review and editing
Samantha M Voors: Formal analysis, Investigation, Validation, Writing - review and editing
Kierra K Watson: Formal analysis, Investigation, Validation, Writing - review and editing
Megan E Wright: Formal analysis, Investigation, Validation, Writing - review and editing
Jacob D Kagey: Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing - review and editing.

Reviewed By

Anonymous and Michael O'Connor

History

Received: May 24, 2019
Accepted: June 4, 2019
Published: June 5, 2019

Copyright

© 2019 by the authors. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International (CC BY 4.0) License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Citation

Bieser, K; Sanford, JS; Saville, K; Arreola, KF; Ayres, ZT; Basulto, D; Benito, S; Breen, CJ; Brix, JA; Brown, N; Burton, KK; Chadwick, TM; Chen, M; Chu, K; Corbett, BL; Dill, Z; Faughender, MA; Hickey, AD; Julia, JS; Kelty, SS; Jobs, BB; Krason, BA; Lam, B; McCullough, CL; McEwen, BR; McKenzie, JL; McQuinn, KR; Moritz, CM; Myers, KE; Naugle, EM; Nutter, AM; O'Conke, DQ; O'Grondik, MT; Patel, KB; Rudowski, SM; Sberna, EN; Stall, GM; Steiner, TL; Tanriverdi, E; Torres Patarroyo, N; Traster, VL; Tsai, LP; Valenti, AJ; Villegas, MM; Voors, SM; Watson, KK; Wright, ME; Kagey, JD (2019). Genetic mapping of shnE.3.2 in Drosophila melanogaster. microPublication Biology. 10.17912/micropub.biology.000118.
Download: RIS BibTeX
microPublication Biology is published by
1200 E. California Blvd. MC 1-43 Pasadena, CA 91125
The microPublication project is supported by
The National Institute of Health -- Grant #: 1U01LM012672-01
microPublication Biology:ISSN: 2578-9430