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microPublication / Biology / Analysis of unc-62 expression pattern...
Analysis of unc-62 expression pattern in C. elegans embryonic AWC neurons
Yi-Wen Hsieh1 and Chiou-Fen Chuang1,2
1Department of Biological Sciences, University of Illinois at Chicago
2Graduate Program in Neuroscience, University of Illinois at Chicago
Correspondence to: Chiou-Fen Chuang (chioufen.chuang@gmail.com)

Abstract

The Caenorhabditis elegans UNC-62 homothorax/Meis/TALE homeodomain protein functions sequentially to regulate general identity of the AWC olfactory neuron pair and the stochastic choice of asymmetric AWC subtypes during embryogenesis. Here we analyze the expression pattern of unc-62 during AWC development using an integrated unc-62::GFP fosmid rescuing transgene. UNC-62::GFP was not detected in AWC neurons in early or late embryos. These results are consistent with previous single-cell RNA sequencing data and also suggest an undetectable level of unc-62 expression and/or low stability of UNC-62 protein in AWC neurons during embryogenesis.

Figure 1. Expression patterns of an integrated unc-62::GFP fosmid transgene in embryonic AWC neurons: (A) Genomic structure and position of the unc-62 locus and gene loci near unc-62 in chromosome V. The genomic region of the unc-62::GFP fosmid clone is shown at the bottom. All UNC-62 protein isoforms are tagged with GFP at the C- terminus from the unc-62::GFP fosmid transgene (Van Nostrand et al., 2013). (B-D) Representative images of UNC-62::GFP expression from an integrated unc-62::GFP fosmid transgene in a gastrula (B), a 1.5-fold stage embryo (C), and a 3-fold stage embryo (D). hlh-16::H1-wCherry and odr-1p::TagRFP expressed from integrated transgenes were used as early and late AWC markers, respectively. Insets in panels B-D are magnified by 2-fold. Scale bar, 10 um. Anterior to the left in B and C.

Description

The UNC-62 homeodomain protein regulates AWC general identity and subsequently plays a cell autonomous role, determined by mosaic analysis, in AWC asymmetry during embryogenesis (Hsieh et al., 2021). An integrated unc-62::GFP fosmid transgene, in which all UNC-62 protein isoforms are tagged with GFP at the C- terminus (Van Nostrand et al., 2013) (Figure 1A), rescued unc-62(lf) mutant phenotypes of AWC general identity, determined by odr-1p::DsRed expression, and AWC asymmetry, determined by str-2p::GFP expression (Hsieh et al., 2021). These results suggest that UNC-62::GFP fusion protein expressed from the unc-62::GFP fosmid transgene is functional for AWC development. It has been shown that this integrated unc-62::GFP fosmid transgene is expressed in sensory neurons, touch neurons, interneurons, ventral nerve cord motor neurons, and head motor neurons, but it is not expressed in AWC in late-stage larvae or young-stage adult worms using the multicolor transgene NeuroPAL (Reilly et al., 2020).

The AWC neurons are born near the end of gastrulation; AWC asymmetry is established around the 1.5-fold and 3-fold embryonic stage (Sulston et al., 1983; Chuang and Bargmann, 2005). To determine whether unc-62 is expressed in AWC neurons at the embryonic stages of AWC development, the expression pattern of the integrated unc-62::GFP fosmid transgene (Van Nostrand et al., 2013) (Figure 1A), was analyzed with integrated hlh-16::H1-wCherry or odr-1p::TagRFP transgene, early or late AWC marker, respectively. UNC-62::GFP was not detected in AWC neurons at the end of gastrulation, 1.5-fold, or 3-fold embryos (Figure 1B-D). Consistent with our results, single-cell RNA sequencing data revealed a very low expression level of unc-62 in AWC during early embryogenesis as well as an undetectable level of unc-62 in AWC in the later embryonic stage and second-larval stage (Cao et al., 2017; Packer et al., 2019). Together, these results suggest that unc-62 may be expressed at an undetectable level and/or UNC-62 protein may have a very short half-life in embryonic AWC neurons.

Reagents

Strain Genotype Source
SD1871 wgIs600 [unc-62::GFP fosmid (derived from unc-62 fosmid clone WRM061dC01); unc-119(+)] Van Nostrand et al., 2013
RW10588 unc-119(ed3); zuIs178 [his-72(1kb 5′ UTR)::his-72::SRPVAT::GFP::his-72 (1KB 3′ UTR) + 5.7 kb XbaI – HindIII unc-119(+)]; stIs10544 [hlh-16::H1-wCherry::let-858 3′ UTR] Murray et al., 2012
IX5658 wgIs600; stIs10544 This study
IX3577 wgIs600; vyIs56[odr-1p::TagRFP] III (Cochella et al., 2014) This study

Acknowledgments

We thank Drs. Eric L. Van Nostrand and Stuart Kim for the SD1871 strain. The RW10588 strain was provided by the Caenorhadbitis Genetics Center (CGC), which is funded by NIH Office of Research Infrastructure Programs (P40 OD010440).

References

Cao J, Packer JS, Ramani V, Cusanovich DA, Huynh C, Daza R, Qiu X, Lee C, Furlan SN, Steemers FJ, Adey A, Waterston RH, Trapnell C, Shendure J. 2017. Comprehensive single-cell transcriptional profiling of a multicellular organism. Science 357: 661-667.
PubMed
Chuang CF, Bargmann CI. 2005. A Toll-interleukin 1 repeat protein at the synapse specifies asymmetric odorant receptor expression via ASK1 MAPKKK signaling. Genes Dev 19: 270-81.
PubMed
Cochella L, Tursun B, Hsieh YW, Galindo S, Johnston RJ, Chuang CF, Hobert O. 2014. Two distinct types of neuronal asymmetries are controlled by the Caenorhabditis elegans zinc finger transcription factor die-1. Genes Dev 28: 34-43.
PubMed
Hsieh YW, Xiong R, Chuang CF. 2021. Synergistic roles of homeodomain proteins UNC-62 homothorax and MLS-2 HMX/NKX in the specification of olfactory neurons in Caenorhabditis elegans. Genetics 219: .
PubMed
Packer JS, Zhu Q, Huynh C, Sivaramakrishnan P, Preston E, Dueck H, Stefanik D, Tan K, Trapnell C, Kim J, Waterston RH, Murray JI. 2019. A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution. Science 365: eaax1971.
PubMed
Reilly MB, Cros C, Varol E, Yemini E, Hobert O. 2020. Unique homeobox codes delineate all the neuron classes of C. elegans. Nature 584: 595-601.
PubMed
Sulston JE, Schierenberg E, White JG, Thomson JN. 1983. The embryonic cell lineage of the nematode Caenorhabditis elegans. Dev Biol 100: 64-119.
PubMed
Van Nostrand EL, Sánchez-Blanco A, Wu B, Nguyen A, Kim SK. 2013. Roles of the developmental regulator unc-62/Homothorax in limiting longevity in Caenorhabditis elegans. PLoS Genet 9: e1003325.
PubMed

Funding

This work was funded by a grant, R01GM098026 awarded to CFC, from the National Institute of General Medical Sciences of the National Institutes of Health.

Author Contributions

Yi-Wen Hsieh: Conceptualization, Methodology, Investigation, Formal analysis, Writing - review and editing
Chiou-Fen Chuang: Conceptualization, Writing - original draft, Writing - review and editing, Funding acquisition, Supervision.

Reviewed By

Paschalis Kratsios and Filipe Goncalves Marques

History

Received: January 15, 2022
Revision received: February 10, 2022
Accepted: February 11, 2022
Published: February 18, 2022

Copyright

© 2022 by the authors. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International (CC BY 4.0) License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Citation

Hsieh, YW; Chuang, CF (2022). Analysis of unc-62 expression pattern in C. elegans embryonic AWC neurons. microPublication Biology. 10.17912/micropub.biology.000530.
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