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microPublication / Biology / Double mutants of TTLL glutamylase...
Double mutants of TTLL glutamylase genes have little to no difference in viability or brood size
Pooja Shah1, Monica Martinez1, Monica Chakraborty1, Sharwani Kota1, Bhumi Shah1, Jessica Lee1 and Nina Peel1
1The College of New Jersey, 2000 Pennington Rd, Ewing, NJ 08618, USA
Correspondence to: Nina Peel (peeln@tcnj.edu)
Figure 1. Embryonic viability and brood size of double mutants.: A) Embryonic viability was determined at 20°C for a minimum of 10 worms of each genotype. All data points are plotted and the means are indicated. B) Normalized brood size at 20°C is indicated for each double mutant. For each worm, brood size was normalized to the mean value of matched wild type controls.  A minimum of 10 worms were assayed for each genotype. All data points are plotted and the means are indicated. Data was formatted using Plots of Data (Postma and Goedhart, 2019).

Description

The tubulin tyrosine ligase like (TTLL) family of enzymes is required for microtubule glutamylation (Janke et al., 2005). Disruption of microtubule glutamylation has been associated with impaired centriole integrity, cilia degeneration, and aberrant neuronal function (Bobinnec et al., 1998; Gadadhar et al., 2017). C. elegans has five glutamylating TTLL enzymes (Chawla et al., 2016). Deletion of individual TTLL enzymes does not impair viability or brood size, moreover microtubule morphology in the early embryo is unaffected (Chawla et al., 2016). To test for potential redundancy between TTLL enzymes we constructed all combinations of double TTLL mutants. Double mutant genotypes were confirmed by PCR. Embryonic viability (percentage of embryos hatching), and brood size (the total number of embryos produced per worm) were determined over the entire reproductive lifespan for a minimum of 10 worms for each genotype, and compared with N2 worms as a wild type control. All experiments were carried out at 20°C.

The viability of the double mutants does not differ significantly from that of wild type in any case (Figure 1A, p>0.05; Student’s t-test). The average brood size for wild type worms varied between trials (ranging from 243 to 338). This presumably results from environmental fluctuations that are beyond our control such as humidity, plate batch variability, etc. To allow comparison of brood size across experiments we normalized brood size of each worm to the average brood size of controls from the same trial (Figure 1B). The brood size of the double mutants does not differ significantly from wild type with two exceptions: ttll-5 ttll-15 (p=0.04; Student’s t-test) and ttll-11; ttll-15 (p=0.01 Student’s t-test). Although in both cases a greater variability in brood size is observed, in neither case is there a consistent increase or decrease in fertility. In the mouse TTLL-5 and TTLL-11 preferentially modify a-tubulin (van Dijk et al., 2007). The specificity of TTLL-15 has not been tested, however it is most similar to TTLL-5 suggesting a likely preference for a-tubulin as a substrate (Chawla et al., 2016). It is therefore possible that the differences in brood size that we have observed reflect redundancy in function between TTLL-15 and other a-tubulin-modifying enzymes. Because this idea is based in an inferred function for TTLL-15, further investigation would be required to confirm the hypothesis. Although we do not find evidence of redundancy between TTLL-5 and TTLL-11, an obvious next step would be to determine whether combined loss of all three a-tubulin-modifying enzymes results in a more severe effect on fertility.

In sum, our data suggest that combined loss of any two glutamylating TTLL enzymes does not impact viability, from which we can infer that cell division, and embryonic development are unperturbed. The fertility of double mutants is largely similar to wild type, although for two genotypes a greater variability in brood size is observed. Since in neither case a consistent increase or decrease is observed the biological significance of this result is currently unclear, nevertheless it may point to a potential function for glutamylation in the germline.

Reagents

Strain Name Genotype
NIN3 ttll-11(tm4059) IV; ttll-15(tm3871)
NIN7 ttll-4(tm3310) III; ttll-15(tm3871) V
NIN22 ttll-5(tm3360) ttll-9(tm3889) V
NIN26 ttll-5(tm3360) ttll-15(tm4957) V
NIN57 ttll-15(tm4957) ttll-9(tm3889) V
NIN61 ttll-11(tm4059) IV; ttll-9(tm3889) V
NIN62 ttll-4 (tm3310) III; ttll-11(tm4059) IV
NIN63 ttll-4 (tm3310) III; ttll-9(tm3889) V
NIN74 ttll-4(tm3310) III; ttll-5(tm3360) V
OC464 ttll-11(tm4059) IV; ttll-5(tm3360) V

Strains have not been deposited at the CGC, but are available from the authors upon request.

Acknowledgments

The authors would like to thank the Biology Department and the School of Science at TCNJ for encouraging and supporting undergraduate engagement in research.

References

Bobinnec, Y., Khodjakov, A., Mir, L. M., Rieder, C. L., Eddé, B. and Bornens, M. (1998). Centriole disassembly in vivo and its effect on centrosome structure and function in vertebrate cells. The Journal of cell biology 143, 1575–1589.
10.1083/jcb.143.6.1575 | PubMed
Chawla, D. G., Shah, R. V., Barth, Z. K., Lee, J. D., Badecker, K. E., Naik, A., Brewster, M. M., Salmon, T. P. and Peel, N. (2016). Caenorhabditis elegans glutamylating enzymes function redundantly in male mating. Biology open 5, 1290–1298.
PubMed
Gadadhar, S., Bodakuntla, S., Natarajan, K. and Janke, C. (2017). The tubulin code at a glance. Journal of cell science 130, 1347–1353.
PubMed
Janke, C., Rogowski, K., Wloga, D., Regnard, C., Kajava, A. V., Strub, J.-M., Temurak, N., van Dijk, J., Boucher, D., van Dorsselaer, A., et al. (2005). Tubulin polyglutamylase enzymes are members of the TTL domain protein family. Science (New York, NY) 308, 1758–1762.
PubMed
Postma, M. and Goedhart, J. (2019). PlotsOfData—A web app for visualizing data together with their summaries. PLOS Biology 17, e3000202.
PubMed
van Dijk, J., Rogowski, K., Miro, J., Lacroix, B., Eddé, B. and Janke, C. (2007). A Targeted Multienzyme Mechanism for Selective Microtubule Polyglutamylation. Molecular cell 26, 437–448.
PubMed

Funding

This work was supported by the National Institute of General Medical Sciences under the National Institutes of Health (Award Number R15GM114727 to NP). The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. Individual deletion mutants were obtained from the National Bioresource Project (Japan).

Author Contributions

Pooja Shah: Investigation, Data curation
Monica Martinez: Investigation
Monica Chakraborty: Investigation
Sharwani Kota: Investigation
Bhumi Shah: Investigation
Jessica Lee: Investigation, Resources
Nina Peel: Conceptualization, Investigation, Formal analysis, Funding acquisition, Writing - original draft.

Reviewed By

Bob O'Hagan

History

Received: August 5, 2019
Accepted: August 7, 2019
Published: August 29, 2019

Copyright

© 2019 by the authors. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International (CC BY 4.0) License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Citation

Shah, P; Martinez, M; Chakraborty, M; Kota, S; Shah, B; Lee, J; Peel, N (2019). Double mutants of TTLL glutamylase genes have little to no difference in viability or brood size. microPublication Biology. 10.17912/micropub.biology.000156.
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